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LOC100131289 uncharacterized LOC100131289 [ Homo sapiens (human) ]

Gene ID: 100131289, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100131289
Gene description
uncharacterized LOC100131289
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in ovary (RPKM 1.7), prostate (RPKM 1.6) and 22 other tissues See more
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Genomic context

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See LOC100131289 in Genome Data Viewer
Location:
6p22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27761744..27763187)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27631436..27632874)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (27729523..27730966)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:27705353-27706552 Neighboring gene G protein-coupled receptor 89 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24304 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24305 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17038 Neighboring gene tRNA-Val (anticodon AAC) 1-5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:27738157-27738797 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:27738798-27739437 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17039 Neighboring gene ribosomal L24 domain containing 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17040 Neighboring gene tRNA-Gln (anticodon CTG) 6-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038929.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL009179

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27761744..27763187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    27631436..27632874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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