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LOC100131425 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene [ Homo sapiens (human) ]

Gene ID: 100131425, updated on 17-Sep-2024

Summary

Gene symbol
LOC100131425
Gene description
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene
See related
Ensembl:ENSG00000227965
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC100131425 in Genome Data Viewer
Location:
7p21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (16888621..16888888)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (17018129..17018396)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (16928245..16928512)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 20 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:16902535-16902704 Neighboring gene anterior gradient 3, protein disulphide isomerase family member Neighboring gene RAD17 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 11479 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:16982305-16982806 Neighboring gene uncharacterized LOC124901594 Neighboring gene uncharacterized LOC105375170 Neighboring gene uncharacterized LOC124901595 Neighboring gene Sharpr-MPRA regulatory regions 10536 and 6796

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030057.1 

    Range
    101..368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    16888621..16888888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    17018129..17018396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)