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TEX13D TEX13 family member D [ Homo sapiens (human) ]

Gene ID: 100132015, updated on 2-Nov-2024

Summary

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Official Symbol
TEX13Dprovided by HGNC
Official Full Name
TEX13 family member Dprovided by HGNC
Primary source
HGNC:HGNC:52278
See related
Ensembl:ENSG00000282419 MIM:301124; AllianceGenome:HGNC:52278
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable mRNA binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See TEX13D in Genome Data Viewer
Location:
Xq25
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (124332660..124336863)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (122643231..122647434)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (123466510..123470713)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1745 Neighboring gene NANOG hESC enhancer GRCh37_chrX:123365081-123365584 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 20 Neighboring gene nucleophosmin 1 pseudogene 34 Neighboring gene uncharacterized LOC105373331 Neighboring gene SH2 domain containing 1A Neighboring gene teneurin transmembrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Wright JC, et al. Nat Commun, 2016 Jun 2. PMID 27250503, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
testis-expressed protein 13D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355534.2 → NP_001342463.1  testis-expressed protein 13D

    Status: VALIDATED

    Source sequence(s)
    AL022718
    Consensus CDS
    CCDS87773.1
    UniProtKB/Swiss-Prot
    A0A0J9YY54
    Related
    ENSP00000488696.1, ENST00000632372.3
    Conserved Domains (3) summary
    sd00025
    Location:681 → 700
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:681 → 701
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam15186
    Location:5 → 148
    TEX13; Testis-expressed sequence 13 protein family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    124332660..124336863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    122643231..122647434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_022700.2: Suppressed sequence

    Description
    NG_022700.2: This RefSeq was removed because it is now thought that this locus encodes a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0J9YY54.1 GenPept UniProtKB/Swiss-Prot:A0A0J9YY54

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials