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PDE4DIPP6 PDE4DIP pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100132057, updated on 17-Jun-2024

Summary

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Official Symbol
PDE4DIPP6provided by HGNC
Official Full Name
PDE4DIP pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:55097
See related
Ensembl:ENSG00000291232 AllianceGenome:HGNC:55097
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.5), brain (RPKM 0.9) and 22 other tissues See more
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Genomic context

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See PDE4DIPP6 in Genome Data Viewer
Location:
1q21.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (148402506..148432546)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (146374793..146404817, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (147874659..147904683)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:143672224-143673063 Neighboring gene microRNA 6077 Neighboring gene RNA, variant U1 small nuclear 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:143686659-143687364 Neighboring gene RNA, variant U1 small nuclear 3 Neighboring gene uncharacterized LOC124904400 Neighboring gene long intergenic non-protein coding RNA 1138 Neighboring gene family with sequence similarity 91 member A1 pseudogene Neighboring gene uncharacterized LOC105371224

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence and biological annotation of human chromosome 1. Gregory SG, et al. Nature, 2006 May 18. PMID 16710414
  2. A census of human soluble protein complexes. Havugimana PC, et al. Cell, 2012 Aug 31. PMID 22939629, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Clone Names

  • FLJ18150

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168361.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  2. NR_168362.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  3. NR_168363.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  4. NR_168364.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  5. NR_168365.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100
    Related
    ENST00000635587.1

  6. NR_168366.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  7. NR_168367.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  8. NR_168368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

  9. NR_168369.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100
    Related
    ENST00000635493.1

  10. NR_168370.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245100

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    148402506..148432546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    146374793..146404817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_030270.2: Suppressed sequence

    Description
    NG_030270.2: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.

  2. NR_033189.1: Suppressed sequence

    Description
    NR_033189.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.

  3. NR_111930.1: Suppressed sequence

    Description
    NR_111930.1: This RefSeq was removed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version

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