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LINC01987 long intergenic non-protein coding RNA 1987 [ Homo sapiens (human) ]

Gene ID: 100132174, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01987provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1987provided by HGNC
Primary source
HGNC:HGNC:52819
See related
Ensembl:ENSG00000267790 AllianceGenome:HGNC:52819
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (77722872..77728559, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (78616170..78621861, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (75718954..75724641, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100507351 Neighboring gene uncharacterized LOC124904103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75559446-75559946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75559947-75560447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75567645-75568584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75568585-75569523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12851 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75587194-75587694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75587695-75588195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75612675-75613176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75613177-75613676 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47418 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47431 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75641660-75642223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75643599-75644173 Neighboring gene uncharacterized LOC107985079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75686650-75687529 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75687530-75688408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75691491-75692460 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47447 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:75712523-75713111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75714893-75715393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75720584-75721084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75765255-75765755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75766103-75766958 Neighboring gene MPRA-validated peak3013 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75786503-75787313 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75792961-75793460 Neighboring gene uncharacterized LOC105371908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75794738-75795238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75795239-75795739 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75797657-75798610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75799563-75800516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75804770-75805270 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75806508-75807196 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75824461-75825107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75841537-75842186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842187-75842834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:75842835-75843484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75848286-75848891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75852763-75853262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75854805-75855306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75855307-75855806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75868565-75869066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:75870617-75871117 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:75872166-75872351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12853 Neighboring gene long intergenic non-protein coding RNA 1973

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104134.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104981
    Related
    ENST00000593118.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    77722872..77728559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    78616170..78621861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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