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LOC100132280 ataxin 3 pseudogene [ Homo sapiens (human) ]

Gene ID: 100132280, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100132280
Gene description
ataxin 3 pseudogene
See related
Ensembl:ENSG00000253107
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100132280 in Genome Data Viewer
Location:
8q23.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (110555387..110556525)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (111684012..111685150)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (111567616..111568754)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:110986489-110987086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27816 Neighboring gene potassium voltage-gated channel modifier subfamily V member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:111094897-111095398 Neighboring gene ribosomal protein SA pseudogene 48 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:111269769-111270270 Neighboring gene NANOG hESC enhancer GRCh37_chr8:111844475-111844976 Neighboring gene Sharpr-MPRA regulatory region 9965 Neighboring gene NADH:ubiquinone oxidoreductase subunit B9 pseudogene 3 Neighboring gene MT-CO1 pseudogene 47

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012373.1 

    Range
    101..1239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    110555387..110556525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    111684012..111685150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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