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CLUHP3 clustered mitochondria homolog pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 100132341, updated on 22-Oct-2024

Summary

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Official Symbol
CLUHP3provided by HGNC
Official Full Name
clustered mitochondria homolog pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:28447
See related
Ensembl:ENSG00000290927 AllianceGenome:HGNC:28447
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
URLC3; C16orf67; KIAA0664L3; KIAA0664P3
Expression
Ubiquitous expression in lymph node (RPKM 5.2), thyroid (RPKM 4.9) and 25 other tissues See more
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Genomic context

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See CLUHP3 in Genome Data Viewer
Location:
16p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (31700594..31707714)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (32087987..32095104)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (31711915..31719035)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 66 pseudogene Neighboring gene RNA binding motif protein 22 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7424 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7425 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:31719202-31719702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10767 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10768 Neighboring gene KRAB box domain containing 5 Neighboring gene uncharacterized LOC107983990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A proteome-scale map of the SARS-CoV-2-human contactome. Kim DK, et al. Nat Biotechnol, 2023 Jan. PMID 36217029, Free PMC Article
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  3. Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. Haenig C, et al. Cell Rep, 2020 Aug 18. PMID 32814053
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • KIAA0664-like 3
  • clustered mitochondria (cluA/CLU1) homolog pseudogene 3
  • up-regulated in lung cancer 3

Clone Names

  • MGC3020, FLJ30136, KIAA0664, MGC31812

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024034.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074050
    Related
    ENST00000254109.11

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    31700594..31707714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    32087987..32095104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_026408.1: Suppressed sequence

    Description
    NG_026408.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NM_024048.2: Suppressed sequence

    Description
    NM_024048.2: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96NS8.1 GenPept UniProtKB/Swiss-Prot:Q96NS8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials