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PAXIP1-AS2 PAXIP1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100132707, updated on 10-Oct-2023

Summary

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Official Symbol
PAXIP1-AS2provided by HGNC
Official Full Name
PAXIP1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:48958
See related
AllianceGenome:HGNC:48958
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PAXIP1OS
Expression
Ubiquitous expression in ovary (RPKM 6.9), spleen (RPKM 5.9) and 25 other tissues See more
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Genomic context

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Location:
7q36.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (154928517..154949490)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (156103794..156124767)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (154720227..154741200)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene dipeptidyl peptidase like 6 Neighboring gene uncharacterized LOC105375581 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:154451859-154453058 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:154455057-154456256 Neighboring gene Sharpr-MPRA regulatory region 9204 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:154541852-154542037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:154559199-154559739 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:154574745-154575246 Neighboring gene uncharacterized LOC105375580 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:154648838-154649492 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:154649493-154650146 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:154660288-154661046 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26889 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:154737734-154738933 Neighboring gene uncharacterized LOC124901781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18839 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:154795729-154796230 Neighboring gene PAXIP1 divergent transcript Neighboring gene PAX interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Knockdown of Long Non-Coding RNA LOC100132707 Inhibits the Migration of Uveal Melanoma Cells via Silencing JAK2. Qi Y, et al. Onco Targets Ther, 2020. PMID 33364785, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • PAXIP1 opposite strand

Clone Names

  • FLJ18763, FLJ32047, AC093726.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024476.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK056609, AK311721, CA309060, N46174

  2. NR_024477.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several 3' exons, but has an alternate 3' exon, as compared to variant 1.
    Source sequence(s)
    AK056609, BC033053, CA309060, N46174

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    154928517..154949490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    156103794..156124767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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