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UXT-AS1 UXT antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100133957, updated on 10-Oct-2023

Summary

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Official Symbol
UXT-AS1provided by HGNC
Official Full Name
UXT antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49239
See related
Ensembl:ENSG00000267064 AllianceGenome:HGNC:49239
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 12.4), bone marrow (RPKM 11.5) and 25 other tissues See more
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Genomic context

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Location:
Xp11.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (47658833..47660111)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (47068736..47070014)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (47518232..47519510)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene complement factor properdin Neighboring gene ETS transcription factor ELK1 Neighboring gene CRISPRi-FlowFISH-validated PLP2 regulatory element 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47517923-47518426 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:47518427-47518928 Neighboring gene CRISPRi-validated cis-regulatory element chrX.881 Neighboring gene ubiquitously expressed prefoldin like chaperone Neighboring gene CXXC finger protein 1 pseudogene 1 Neighboring gene SMS pseudogene 1 Neighboring gene zinc finger protein 585A pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK295794, DB182705
    Related
    ENST00000591832.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    47658833..47660111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    47068736..47070014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_027444.2: Suppressed sequence

    Description
    NR_027444.2: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein
Heading Accession and Version

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