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Zfp9 zinc finger protein 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100158232, updated on 17-Aug-2024

Summary

Symbol
Zfp9provided by RGD
Full Name
zinc finger protein 9provided by RGD
Primary source
RGD:2293498
See related
EnsemblRapid:ENSRNOG00000006726 AllianceGenome:RGD:2293498
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to several human genes including ZNF248 (zinc finger protein 248). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 30.8), Heart (RPKM 28.9) and 9 other tissues See more
Orthologs
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Genomic context

Location:
4q42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (153311020..153329038, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (151638724..151656740, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (150482989..150533610, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene uncharacterized LOC134486626 Neighboring gene U4 spliceosomal RNA Neighboring gene BMS1 ribosome biogenesis factor Neighboring gene zinc finger protein 248 Neighboring gene ankyrin repeat domain containing 26 Neighboring gene uncharacterized LOC134486629 Neighboring gene calcium voltage-gated channel subunit alpha1 C

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Clone Names

  • MGC188133

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127635.2NP_001121107.1  zinc finger protein 25

    See identical proteins and their annotated locations for NP_001121107.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    B2GV60, F1LNE0
    Related
    ENSRNOP00000058904.4, ENSRNOT00000065579.6
    Conserved Domains (5) summary
    smart00349
    Location:867
    KRAB; krueppel associated box
    COG5048
    Location:170454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259279
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:271296
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    153311020..153329038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)