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LOC100159811 neuroligin-4, Y-linked-like [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100159811, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100159811
Gene description
neuroligin-4, Y-linked-like
See related
APHIDBASE:ACYPI001158; EnsemblRapid:LOC100159811
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100159811 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
12
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (161594929..162111470)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384289.1 (9766..43370)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 2 Neighboring gene hippocampus abundant transcript 1 protein Neighboring gene microtubule-associated protein tau Neighboring gene uncharacterized LOC100162280 Neighboring gene uncharacterized LOC103307644 Neighboring gene uncharacterized LOC100160234 Neighboring gene archease Neighboring gene 60S acidic ribosomal protein P1 Neighboring gene acyl-CoA dehydrogenase family member 9, mitochondrial Neighboring gene uncharacterized protein LOC100158873 Neighboring gene Hydroxyacid oxidase Neighboring gene gustatory receptor for sugar taste 64f-like Neighboring gene uncharacterized LOC107884710

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in presynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroligin-4, Y-linked-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    161594929..162111470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029488726.1 → XP_029344586.1  neuroligin-4, Y-linked-like

    UniProtKB/TrEMBL
    A0A8R2JRB8
    Related
    XP_029344586.1, XM_029488726.1

  2. XM_029488724.1 → XP_029344584.1  neuroligin-4, Y-linked-like

    UniProtKB/TrEMBL
    A0A8R2JRB8
    Related
    XP_029344584.1, XM_029488724.1
    Conserved Domains (1) summary
    pfam00135
    Location:37 → 635
    COesterase; Carboxylesterase family

  3. XM_029488727.1 → XP_029344587.1  neuroligin-4, Y-linked-like

    UniProtKB/TrEMBL
    A0A8R2JRB8
    Related
    XP_029344587.1, XM_029488727.1

  4. XM_029488728.1 → XP_029344588.1  neuroligin-4, Y-linked-like

    UniProtKB/TrEMBL
    A0A8R2JRB8
    Related
    XP_029344588.1, XM_029488728.1
Nucleotide Protein
Heading Accession and Version

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