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LOC100165800 hippocampus abundant transcript 1 protein [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100165800, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100165800
Gene description
hippocampus abundant transcript 1 protein
See related
APHIDBASE:ACYPI006724; EnsemblRapid:LOC100165800
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100165800 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (161574107..161590945, complement)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003384641.1 (40421..57250)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 2 Neighboring gene Myosin light chain alkali Neighboring gene neuroligin-4, Y-linked-like Neighboring gene microtubule-associated protein tau Neighboring gene uncharacterized LOC100162280 Neighboring gene uncharacterized LOC103307644

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hippocampus abundant transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    161574107..161590945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001949522.5 → XP_001949557.2  hippocampus abundant transcript 1 protein

    UniProtKB/TrEMBL
    A0A8R2A8G2
    Related
    XP_001949557.2, XM_001949522.5
    Conserved Domains (1) summary
    cl28910
    Location:11 → 448
    MFS; Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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