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LOC100167288 protogenin B [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100167288, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100167288
Gene description
protogenin B
See related
APHIDBASE:ACYPI008096; EnsemblRapid:LOC100167288
Gene type
protein coding
RefSeq status
MODEL
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
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Genomic context

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See LOC100167288 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
18
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (161473494..161515126)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383511.1 (80747..122381)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene proton-coupled folate transporter Neighboring gene godzilla E3 ubiquitin protein ligase Neighboring gene Myosin light chain alkali Neighboring gene cyclin-dependent kinase 2 Neighboring gene microtubule-associated protein tau

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protogenin B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    161473494..161515126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001949063.5 → XP_001949098.2  protogenin B

    UniProtKB/TrEMBL
    A0A8R1W763
    Related
    XP_001949098.2, XM_001949063.5
    Conserved Domains (5) summary
    cd00063
    Location:863 → 956
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:153 → 210
    Ig; Immunoglobulin domain
    pfam00041
    Location:571 → 649
    fn3; Fibronectin type III domain
    pfam13927
    Location:259 → 320
    Ig_3; Immunoglobulin domain
    cl11960
    Location:355 → 422
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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