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LINC00426 long intergenic non-protein coding RNA 426 [ Homo sapiens (human) ]

Gene ID: 100188949, updated on 17-Sep-2024

Summary

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Official Symbol
LINC00426provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 426provided by HGNC
Primary source
HGNC:HGNC:42761
See related
Ensembl:ENSG00000238121 AllianceGenome:HGNC:42761
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 4.1), appendix (RPKM 1.8) and 12 other tissues See more
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Genomic context

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See LINC00426 in Genome Data Viewer
Location:
13q12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30340266..30373914, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29562745..29596390, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30914403..30948051, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene katanin catalytic subunit A1 like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5229 Neighboring gene peroxiredoxin 2 pseudogene 1 Neighboring gene uncharacterized LOC124903145 Neighboring gene long intergenic non-protein coding RNA 427 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:30912012-30913211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5232 Neighboring gene long intergenic non-protein coding RNA 1058 Neighboring gene ubiquitin conjugating enzyme E2 L5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis. Du W, et al. Thorac Cancer, 2020 Jan. PMID 31691516, Free PMC Article
  2. Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge. Li H, et al. Cell Death Dis, 2020 Dec 11. PMID 33311443, Free PMC Article
  3. An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma. Zhu R, et al. Comput Math Methods Med, 2020. PMID 33204302, Free PMC Article
  4. Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants. van der Valk RJ, et al. J Allergy Clin Immunol, 2014 Jul. PMID 24315451, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma.
    Title: An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma.
  2. Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge.
    Title: Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge.
  3. Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis.
    Title: Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024464.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356750
    Related
    ENST00000447147.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    30340266..30373914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    29562745..29596390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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