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TRK-CTT5-1 tRNA-Lys (anticodon CTT) 5-1 [ Homo sapiens (human) ]

Gene ID: 100189209, updated on 17-Sep-2024

Summary

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Official Symbol
TRK-CTT5-1provided by HGNC
Official Full Name
tRNA-Lys (anticodon CTT) 5-1provided by HGNC
Primary source
HGNC:HGNC:34772
See related
AllianceGenome:HGNC:34772
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAK21
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Genomic context

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See TRK-CTT5-1 in Genome Data Viewer
Location:
16p13.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (3180554..3180626, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (3207166..3207238, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3230555..3230627, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3221481-3222221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3222222-3222961 Neighboring gene tRNA-Pro (anticodon CGG) 1-2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:3225435-3225946 Neighboring gene tRNA-Lys (anticodon CTT) 2-5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10312 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7126 Neighboring gene tRNA-Pro (anticodon AGG) 2-7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10313 Neighboring gene tRNA-Pro (anticodon TGG) 3-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Lys (CTT) 5-1
  • transfer RNA lysine 21 (anticodon CUU)
  • transfer RNA-Lys (CTT) 5-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    3180554..3180626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    3207166..3207238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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