U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100244281 ISWI chromatin-remodeling complex ATPase CHR11 [ Vitis vinifera (wine grape) ]

Gene ID: 100244281, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100244281
Gene description
ISWI chromatin-remodeling complex ATPase CHR11
Locus tag
VIT_00017791001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100244281 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 5 NC_081809.1 (3706401..3715937, complement)
102 previous assembly 12X (GCF_000003745.3) 5 NC_012011.3 (3494974..3504382, complement)

Chromosome 5 - NC_081809.1Genomic Context describing neighboring genes Neighboring gene monothiol glutaredoxin-S10 Neighboring gene serine/threonine-protein kinase PBL27 Neighboring gene lipase Neighboring gene uncharacterized LOC104879238

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ISWI chromatin-remodeling complex ATPase CHR11
Names
putative chromatin-remodeling complex ATPase chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081809.1 Reference ASM3070453v1 Primary Assembly

    Range
    3706401..3715937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002275751.5 → XP_002275787.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X4

    See identical proteins and their annotated locations for XP_002275787.1

    UniProtKB/TrEMBL
    A0A438KLZ4, D7T6I2
    Conserved Domains (6) summary
    PLN03142
    Location:23 → 1065
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd00046
    Location:224 → 363
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00167
    Location:858 → 902
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00271
    Location:520 → 619
    Helicase_C; Helicase conserved C-terminal domain
    pfam09110
    Location:768 → 855
    HAND; HAND
    pfam09111
    Location:912 → 1021
    SLIDE; SLIDE

  2. XM_059736796.1 → XP_059592779.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X3

  3. XM_059736795.1 → XP_059592778.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X2

  4. XM_059736794.1 → XP_059592777.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials