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LOC100255429 uncharacterized LOC100255429 [ Vitis vinifera (wine grape) ]

Gene ID: 100255429, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100255429
Gene description
uncharacterized LOC100255429
Locus tag
VIT_00037694001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100255429 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (6967902..6972449)
102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (6960120..6964816)

Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene stigma-specific STIG1-like protein 1 Neighboring gene cytochrome b561 and DOMON domain-containing protein At2g04850 Neighboring gene 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC100265941 Neighboring gene uncharacterized LOC104877596

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100255429
Names
proline synthase co-transcribed bacterial homolog protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

    Range
    6967902..6972449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010646183.3 → XP_010644485.1  uncharacterized protein LOC100255429 isoform X1

    UniProtKB/TrEMBL
    A5B8Z4
    Conserved Domains (1) summary
    cd06822
    Location:14 → 250
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins

  2. XM_002278856.5 → XP_002278892.1  uncharacterized protein LOC100255429 isoform X2

    See identical proteins and their annotated locations for XP_002278892.1

    UniProtKB/TrEMBL
    A5B8Z4, D7T812
    Conserved Domains (1) summary
    cd06822
    Location:14 → 235
    PLPDE_III_YBL036c_euk; Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins
Nucleotide Protein
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