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LOC100264359 uncharacterized protein At2g29880 [ Vitis vinifera (wine grape) ]

Gene ID: 100264359, updated on 20-Nov-2023

Summary

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Gene symbol
LOC100264359
Gene description
uncharacterized protein At2g29880
Locus tag
VIT_00012454001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100264359 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (19589652..19611119)
102 previous assembly 12X (GCF_000003745.3) 13 Unlocalized Scaffold NW_003724178.1 (1116473..1137932, complement)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104877892 Neighboring gene mediator of RNA polymerase II transcription subunit 15a Neighboring gene uncharacterized LOC100254054 Neighboring gene uncharacterized LOC104877879 Neighboring gene uncharacterized LOC100260916

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein At2g29880

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    19589652..19611119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019217703.2 → XP_019073248.1  uncharacterized protein At2g29880 isoform X2

  2. XM_002275147.5 → XP_002275183.1  uncharacterized protein At2g29880 isoform X3

    See identical proteins and their annotated locations for XP_002275183.1

    UniProtKB/TrEMBL
    A0A438IB79, F6I6N3
    Conserved Domains (1) summary
    pfam12776
    Location:22 → 116
    Myb_DNA-bind_3; Myb/SANT-like DNA-binding domain

  3. XM_019217702.2 → XP_019073247.1  uncharacterized protein At2g29880 isoform X1

  4. XM_059742079.1 → XP_059598062.1  uncharacterized protein At2g29880 isoform X3

    UniProtKB/TrEMBL
    A0A438IB79, F6I6N3
Nucleotide Protein
Heading Accession and Version

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