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LOC100267673 peroxisome biogenesis protein 16 [ Vitis vinifera (wine grape) ]

Gene ID: 100267673, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100267673
Gene description
peroxisome biogenesis protein 16
Locus tag
VIT_00027589001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100267673 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 15 NC_081819.1 (18270883..18277236)
102 previous assembly 12X (GCF_000003745.3) 15 NC_012021.3 (15252724..15259081)

Chromosome 15 - NC_081819.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.1 Neighboring gene subtilisin-like protease SBT1.1 Neighboring gene transcription factor TCP9 Neighboring gene phospholipase D beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome biogenesis protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081819.1 Reference ASM3070453v1 Primary Assembly

    Range
    18270883..18277236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002272895.5 → XP_002272931.2  peroxisome biogenesis protein 16 isoform X1

    See identical proteins and their annotated locations for XP_002272931.2

    UniProtKB/TrEMBL
    D7U7Q6
    Conserved Domains (1) summary
    pfam08610
    Location:4 → 360
    Pex16; Peroxisomal membrane protein (Pex16)

  2. XM_010663312.2 → XP_010661614.1  peroxisome biogenesis protein 16 isoform X2

    UniProtKB/TrEMBL
    A0A438DZY6
    Conserved Domains (1) summary
    pfam08610
    Location:8 → 296
    Pex16; Peroxisomal membrane protein (Pex16)
Nucleotide Protein
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