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RPS17P13 ribosomal protein S17 pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 100271073, updated on 17-Sep-2024

Summary

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Official Symbol
RPS17P13provided by HGNC
Official Full Name
ribosomal protein S17 pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:36664
See related
Ensembl:ENSG00000224706 AllianceGenome:HGNC:36664
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS17_6_804
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Genomic context

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See RPS17P13 in Genome Data Viewer
Location:
7p14.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (37116808..37117185)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (37257213..37257590)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (37156413..37156790)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene engulfment and cell motility 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25846 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25847 Neighboring gene microRNA 1200 Neighboring gene MPRA-validated peak6484 silencer Neighboring gene Sharpr-MPRA regulatory region 8653 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:37052330-37053529 Neighboring gene ELMO1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25849 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:37071299-37072498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25851 Neighboring gene NANOG hESC enhancer GRCh37_chr7:37156919-37157420 Neighboring gene origin-enriched sequence 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:37193283-37193902 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25852 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:37243623-37244822 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:37287752-37288372 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:37288373-37288992 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:37318405-37318906 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:37318907-37319406 Neighboring gene Sharpr-MPRA regulatory region 7000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25854 Neighboring gene RNA, U6 small nuclear 565, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011159.1 

    Range
    101..478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    37116808..37117185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    37257213..37257590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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