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LSM3P1 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100303748, updated on 17-Sep-2024

Summary

Official Symbol
LSM3P1provided by HGNC
Official Full Name
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44346
See related
AllianceGenome:HGNC:44346
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LSM3P1 in Genome Data Viewer
Location:
17q21.32
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (48211280..48211786, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (49074676..49075182, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (46288642..46289148, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:46237721-46238266 Neighboring gene src kinase associated phosphoprotein 1 Neighboring gene microRNA 1203 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:46269531-46270148 Neighboring gene RNA, U6 small nuclear 1152, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:46296699-46297541 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12328 Neighboring gene SKAP1 antisense RNA 2 Neighboring gene Sharpr-MPRA regulatory region 12941 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

General gene information

Other Names

  • LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 1
  • LSM3 homolog, U6 small nuclear RNA associated pseudogene 1
  • LSM3 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012904.3 

    Range
    101..607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    48211280..48211786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    49074676..49075182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)