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Vcf2 VCP nuclear cofactor family member 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100359832, updated on 17-Aug-2024

Summary

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Official Symbol
Vcf2provided by RGD
Official Full Name
VCP nuclear cofactor family member 2provided by RGD
Primary source
RGD:2323310
See related
EnsemblRapid:ENSRNOG00000049908 EnsemblRapid:ENSRNOG00000090943 AllianceGenome:RGD:2323310
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tmem29; Fam104b; Fam156a; Fam156b
Summary
Orthologous to human FAM104B (family with sequence similarity 104 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 22.9), Lung (RPKM 21.8) and 9 other tissues See more
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Genomic context

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Location:
Xq12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (22762022..22820680, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (19310182..19393156, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (20821296..20849672, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene basic leucine zipper and W2 domains 1, pseudogene 3 Neighboring gene 5'-aminolevulinate synthase 2 Neighboring gene apurinic/apyrimidinic endodeoxyribonuclease 2 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
transmembrane protein 29
Names
family with sequence similarity 104 member B
family with sequence similarity 156, member A
family with sequence similarity 156, member B
rCG38975-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402344.1 → NP_001389273.1  transmembrane protein 29 isoform 1

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000021
    Related
    ENSRNOP00000088390.2, ENSRNOT00000093160.3

  2. NM_001408891.1 → NP_001395820.1  transmembrane protein 29 isoform 2

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    A6KL66
    Related
    ENSRNOP00000111367.1, ENSRNOT00000169441.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    22762022..22820680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279692.1 → XP_063135762.1  transmembrane protein 29 isoform X1

    UniProtKB/TrEMBL
    A6KL66

  2. XM_006256808.5 → XP_006256870.1  transmembrane protein 29 isoform X4

    UniProtKB/TrEMBL
    A6KL67
    Conserved Domains (1) summary
    pfam15434
    Location:7 → 113
    FAM104; Family 104

  3. XM_017602280.3 → XP_017457769.1  transmembrane protein 29 isoform X2

    UniProtKB/TrEMBL
    A6KL67

  4. XM_006256807.5 → XP_006256869.1  transmembrane protein 29 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AJ65, A6KL67
    Conserved Domains (1) summary
    pfam15434
    Location:15 → 121
    FAM104; Family 104
Nucleotide Protein Strain
Heading Accession and Version

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