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Fam131a family with sequence similarity 131, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360487, updated on 9-Nov-2024

Summary

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Symbol
Fam131aprovided by RGD
Full Name
family with sequence similarity 131, member Aprovided by RGD
Primary source
RGD:2322069
See related
EnsemblRapid:ENSRNOG00000063031 AllianceGenome:RGD:2322069
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human FAM131A (family with sequence similarity 131 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 186.5), Heart (RPKM 69.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam131a in Genome Data Viewer
Location:
11q23
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (93715979..93725930, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (80211577..80221527, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (83897330..83907292, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene thrombopoietin like 1 Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene chloride voltage-gated channel 2 Neighboring gene eukaryotic translation initiation factor 4 gamma 1 Neighboring gene small nucleolar RNA, C/D box 66 Neighboring gene proteasome 26S subunit ubiquitin receptor, non-ATPase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein FAM131A
Names
protein FAM131A-like
rCG36585-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421442.1 → NP_001408371.1  protein FAM131A isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    UniProtKB/TrEMBL
    A6JS88, D4ADK8
    Related
    ENSRNOP00000066988.4, ENSRNOT00000075606.4

  2. NM_001421443.1 → NP_001408372.1  protein FAM131A isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    UniProtKB/TrEMBL
    A6JS87
    Related
    ENSRNOP00000065591.4, ENSRNOT00000073526.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    93715979..93725930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270225.1 → XP_063126295.1  protein FAM131A isoform X1

    UniProtKB/TrEMBL
    A6JS87

  2. XM_008768818.4 → XP_008767040.1  protein FAM131A isoform X2

    See identical proteins and their annotated locations for XP_008767040.1

    UniProtKB/TrEMBL
    A6JS88, D4ADK8
    Conserved Domains (1) summary
    pfam15010
    Location:1 → 271
    FAM131; Putative cell signalling

  3. XM_039088957.2 → XP_038944885.1  protein FAM131A isoform X2

    UniProtKB/TrEMBL
    A6JS88, D4ADK8
    Conserved Domains (1) summary
    pfam15010
    Location:1 → 271
    FAM131; Putative cell signalling

  4. XM_008768817.3 → XP_008767039.1  protein FAM131A isoform X2

    See identical proteins and their annotated locations for XP_008767039.1

    UniProtKB/TrEMBL
    A6JS88, D4ADK8
    Conserved Domains (1) summary
    pfam15010
    Location:1 → 271
    FAM131; Putative cell signalling

  5. XM_017598227.3 → XP_017453716.1  protein FAM131A isoform X2

    UniProtKB/TrEMBL
    A6JS88, D4ADK8
    Conserved Domains (1) summary
    pfam15010
    Location:1 → 271
    FAM131; Putative cell signalling

  6. XM_039088956.2 → XP_038944884.1  protein FAM131A isoform X3

    Conserved Domains (1) summary
    pfam15010
    Location:86 → 208
    FAM131; Putative cell signalling
Nucleotide Protein Strain
Heading Accession and Version

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