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Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360750, updated on 2-Nov-2024

Summary

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Official Symbol
Lsm6l1provided by RGD
Official Full Name
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1provided by RGD
Primary source
RGD:2321508
See related
EnsemblRapid:ENSRNOG00000030374 AllianceGenome:RGD:2321508
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in tRNA processing. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 149.2), Spleen (RPKM 98.6) and 9 other tissues See more
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Genomic context

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See Lsm6l1 in Genome Data Viewer
Location:
13q13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (44666286..44668849)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (42114013..42116559)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (47380376..47382933)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene zona pellucida 3 receptor Neighboring gene complement component 4 binding protein, alpha Neighboring gene complement component 4 binding protein, beta Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene YOD1 deubiquitinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm6
Names
Sm protein F-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    44666286..44668849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598963.3 → XP_017454452.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A6IBZ0, A6IYJ3, D3ZG07
    Related
    ENSRNOP00000050933.3, ENSRNOT00000050289.7
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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