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LOC100361180 40S ribosomal protein S17-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100361180, updated on 14-Nov-2024

Summary

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Symbol
LOC100361180provided by RGD
Full Name
40S ribosomal protein S17-likeprovided by RGD
Primary source
RGD:2320681
See related
AllianceGenome:RGD:2320681
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
AABR07018533.1
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 4083.5), Thymus (RPKM 3637.5) and 9 other tissues See more
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Genomic context

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See LOC100361180 in Genome Data Viewer
Location:
15q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (63585894..63587992, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (57178425..57179006, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (64190561..64191115, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene microRNA 1297 Neighboring gene sorbitol dehydrogenase, pseudogene 6 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene Neighboring gene uncharacterized LOC102554138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosolic ribosome IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS17-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    63585894..63587992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063274835.1 → XP_063130905.1  small ribosomal subunit protein eS17-like

Nucleotide Protein Strain
Heading Accession and Version

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