U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Lsm14b LSM family member 14B [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362102, updated on 2-May-2024

Summary

Go to the top of the page Help
Official Symbol
Lsm14bprovided by RGD
Official Full Name
LSM family member 14Bprovided by RGD
Primary source
RGD:1563798
See related
Ensembl:ENSRNOG00000054557 AllianceGenome:RGD:1563798
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563798
Summary
Orthologous to human LSM14B (LSM family member 14B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 215.7), Heart (RPKM 213.4) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Lsm14b in Genome Data Viewer
Location:
3q43
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (187503251..187514041)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (167125633..167136417)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (175408433..175419180)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486514 Neighboring gene U2 spliceosomal RNA Neighboring gene proteasome 20S subunit alpha 7 Neighboring gene SS18L1 subunit of BAF chromatin remodeling complex

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein LSM14 homolog B
Names
LSM14 homolog B
LSM14B, SCD6 homolog B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    187503251..187514041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002729258.7 → XP_002729304.4  protein LSM14 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZN03
    Related
    ENSRNOP00000079430.1
    Conserved Domains (2) summary
    cd01736
    Location:83 → 156
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:325 → 426
    FDF; FDF domain

  2. XM_063285136.1 → XP_063141206.1  protein LSM14 homolog B isoform X4

  3. XM_006235828.5 → XP_006235890.2  protein LSM14 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A8I5Y947
    Related
    ENSRNOP00000076798.1
    Conserved Domains (2) summary
    cd01736
    Location:83 → 156
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:338 → 439
    FDF; FDF domain

  4. XM_006235827.5 → XP_006235889.2  protein LSM14 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A0G2JZY0
    Related
    ENSRNOP00000071227.2
    Conserved Domains (2) summary
    cd01736
    Location:83 → 156
    LSm14_N; Like-Sm protein 14, N-terminal domain
    pfam09532
    Location:364 → 465
    FDF; FDF domain

  5. XM_039106756.2 → XP_038962684.1  protein LSM14 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A8I6A557
    Related
    ENSRNOP00000086105.1
    Conserved Domains (2) summary
    pfam09532
    Location:225 → 326
    FDF; FDF domain
    cl00259
    Location:83 → 119
    Sm_like; Sm and related proteins

  6. XM_039106757.2 → XP_038962685.1  protein LSM14 homolog B isoform X6

    UniProtKB/TrEMBL
    A6KMD0
    Conserved Domains (1) summary
    pfam09532
    Location:117 → 218
    FDF; FDF domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools