Irgm2 immunity-related GTPase family M member 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Irgm2provided by RGD
Official Full Name: immunity-related GTPase family M member 2provided by RGD
Primary source: RGD:2324125
See related: EnsemblRapid:ENSRNOG00000073574 AllianceGenome:RGD:2324125
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ifggd2
Expression: Biased expression in Liver (RPKM 631.7), Adrenal (RPKM 330.1) and 8 other tissues See more
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Genomic context

Location:: 10q22

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (42889919..42900060)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (42389452..42399604)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (43645508..43655657)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH136910 (e-PCR)
- UniSTS:218999

AI175782 (e-PCR)
- UniSTS:260755

General protein information

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Preferred Names: interferon inducible GTPase 2

Names: immunity-related GTPase family M protein 1; interferon-gamma-inducible GTPase Ifggd2 protein; rCG32755-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001408748.1 → NP_001395677.1 interferon inducible GTPase 2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

UniProtKB/TrEMBL

J7P1Z1

Related

ENSRNOP00000100313.1, ENSRNOT00000169951.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086028.1 Reference GRCr8

Range

42889919..42900060

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039087216.2 → XP_038943144.1 interferon inducible GTPase 2 isoform X1

UniProtKB/TrEMBL

J7P1Z1

Conserved Domains (1) summary

pfam05049
Location:30 → 389

IIGP; Interferon-inducible GTPase (IIGP)