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Hsp90aa1-ps17 heat shock protein 90 alpha family class A member 1, pseudogene 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362895, updated on 13-Apr-2024

Summary

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Official Symbol
Hsp90aa1-ps17provided by RGD
Official Full Name
heat shock protein 90 alpha family class A member 1, pseudogene 17provided by RGD
Primary source
RGD:2323884
See related
AllianceGenome:RGD:2323884
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 1993.2), Testes (RPKM 1773.2) and 9 other tissues See more
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Genomic context

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See Hsp90aa1-ps17 in Genome Data Viewer
Location:
5q36
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143416545..143417879, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138131979..138133313, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (143864687..143866018, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486989 Neighboring gene uncharacterized LOC108351031 Neighboring gene glutamate ionotropic receptor kainate type subunit 3 Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene U1 small nuclear ribonucleoprotein C pseudogene Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The chaperone-mediated autophagy receptor organizes in dynamic protein complexes at the lysosomal membrane. Bandyopadhyay U, et al. Mol Cell Biol, 2008 Sep. PMID 18644871, Free PMC Article
  2. Small glutamine-rich tetratricopeptide repeat-containing protein is composed of three structural units with distinct functions. Liou ST, et al. Arch Biochem Biophys, 2005 Mar 15. PMID 15708368
  3. Interaction of a Novel Chaperone PhLP2A With the Heat Shock Protein Hsp90. Krzemień-Ojak Ł, et al. J Cell Biochem, 2017 Feb. PMID 27496612
  4. Two-dimensional electrophoresis with cationic detergents: a powerful tool for the proteomic analysis of myelin proteins. Part 2: analytical aspects. Yamaguchi Y, et al. J Neurosci Res, 2008 Mar. PMID 17960831
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • heat shock protein 1, alpha-like
  • heat shock protein HSP 90-alpha
  • heat shock protein HSP 90-alpha-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_176835.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    143416545..143417879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.