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Rpa3l1 replication protein A3 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362927, updated on 14-Nov-2024

Summary

Official Symbol
Rpa3l1provided by RGD
Official Full Name
replication protein A3 like 1provided by RGD
Primary source
RGD:2323766
See related
EnsemblRapid:ENSRNOG00000037481 AllianceGenome:RGD:2323766
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human RPA3 (replication protein A3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Rpa3l1 in Genome Data Viewer
Location:
12q16
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (51568413..51568839, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (45908653..45909063, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (51965390..51965816, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene uncharacterized LOC120096017 Neighboring gene pseudouridine synthase 1 Neighboring gene E1A binding protein p400 Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA, H/ACA box 49

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in DNA replication IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in base-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of DNA replication factor A complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in site of double-strand break IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
replication protein A 14 kDa subunit-like
Names
replication protein A3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    51568413..51568839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039090203.2XP_038946131.1  replication protein A 14 kDa subunit-like

    UniProtKB/TrEMBL
    D3ZQ91
    Related
    ENSRNOP00000053576.1, ENSRNOT00000056733.4
    Conserved Domains (1) summary
    pfam08661
    Location:5113
    Rep_fac-A_3; Replication factor A protein 3