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Cystm1 cysteine-rich transmembrane module containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100363310, updated on 2-Nov-2024

Summary

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Official Symbol
Cystm1provided by RGD
Official Full Name
cysteine-rich transmembrane module containing 1provided by RGD
Primary source
RGD:2323233
See related
EnsemblRapid:ENSRNOG00000018775 AllianceGenome:RGD:2323233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CYSTM1 (cysteine rich transmembrane module containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 258.9), Kidney (RPKM 203.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cystm1 in Genome Data Viewer
Location:
18p11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (28219861..28287574)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (27945862..28013509)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (29165206..29233351)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098187 Neighboring gene purine rich element binding protein A Neighboring gene IgA-inducing protein Neighboring gene prefoldin subunit 1 Neighboring gene heparin-binding EGF-like growth factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
cysteine-rich and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402495.1 → NP_001389424.1  cysteine-rich and transmembrane domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000018
    UniProtKB/TrEMBL
    A0A8I5ZQ00, A6J307
    Related
    ENSRNOP00000080522.1, ENSRNOT00000094556.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    28219861..28287574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006254621.5 → XP_006254683.1  cysteine-rich and transmembrane domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006254683.1

  2. XM_006254622.4 → XP_006254684.1  cysteine-rich and transmembrane domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006254684.1

    Related
    ENSRNOP00000025495.5, ENSRNOT00000025495.9
    Conserved Domains (1) summary
    pfam12734
    Location:93 → 130
    CYSTM; Cysteine-rich TM module stress tolerance

  3. XM_039097367.2 → XP_038953295.1  cysteine-rich and transmembrane domain-containing protein 1 isoform X4

  4. XM_039097366.2 → XP_038953294.1  cysteine-rich and transmembrane domain-containing protein 1 isoform X3

  5. XM_063277049.1 → XP_063133119.1  cysteine-rich and transmembrane domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A6J308, D4A713
    Related
    ENSRNOP00000061418.1, ENSRNOT00000068085.5
Nucleotide Protein Strain
Heading Accession and Version

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