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LOC100364500 RT1 class I, locus CE11-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100364500, discontinued on 6-Mar-2021

Summary

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Symbol
LOC100364500provided by RGD
Full Name
RT1 class I, locus CE11-likeprovided by RGD
Primary source
RGD:2320860
Gene type
protein coding
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 1435.3), Thymus (RPKM 1341.5) and 9 other tissues See more
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Genomic context

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See LOC100364500 in Genome Data Viewer
Location:
20p12
Exon count:
7
Annotation release Status Assembly Chr Location
106 latest, but not current Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2704153..2707111, complement)
106 latest, but not current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001085828.1 (7828..9090, complement)
106 latest, but not current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001087959.1 (4..2259)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General protein information

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Names
RT1 class I, locus CE11-like
RT1 class I histocompatibility antigen, AA alpha chain
class I histocompatibility antigen, Non-RT1.A alpha-1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005119.4 Reference Rnor_6.0 Primary Assembly

    Range
    2704153..2707111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006255892.3 → XP_006255954.2  

Alternate Rn_Celera

Genomic

  1. NW_001085828.1 Alternate Rn_Celera

    Range
    7828..9090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588544.1 → XP_017444033.1  

Alternate Rn_Celera

Genomic

  1. NW_001087959.1 Alternate Rn_Celera

    Range
    4..2259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017588574.1 → XP_017444063.1  

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