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TUBB6P1 tubulin beta 6 class V pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100418964, updated on 17-Sep-2024

Summary

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Official Symbol
TUBB6P1provided by HGNC
Official Full Name
tubulin beta 6 class V pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:42342
See related
Ensembl:ENSG00000275350 AllianceGenome:HGNC:42342
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See TUBB6P1 in Genome Data Viewer
Location:
1p34.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38383847..38384430, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (38251080..38251662, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38849519..38850102, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene long intergenic non-protein coding RNA 1343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38704546-38705076 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38736051-38736648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38736899-38737076 Neighboring gene uncharacterized LOC105378657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38827443-38827961 Neighboring gene VISTA enhancer hs1546 Neighboring gene RNA, U6 small nuclear 753, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:38889980-38890924 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38890925-38891868 Neighboring gene uncharacterized LOC107984943

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026927.1 

    Range
    101..684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38383847..38384430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    38251080..38251662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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