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SNX18P15 sorting nexin 18 pseudogene 15 [ Homo sapiens (human) ]

Gene ID: 100419019, updated on 28-Oct-2024

Summary

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Official Symbol
SNX18P15provided by HGNC
Official Full Name
sorting nexin 18 pseudogene 15provided by HGNC
Primary source
HGNC:HGNC:39623
See related
AllianceGenome:HGNC:39623
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SNX18P15 in Genome Data Viewer
Location:
1q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 Unlocalized Scaffold NT_113793.3 (124376..125329, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (49411547..49412500)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (142659810..142660763, complement)

NT_113793.3Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:142536141-142536956 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:142536957-142537773 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:142537774-142538589 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:142539407-142540222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142540223-142541038 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142541039-142541854 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142541884-142542426 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142542427-142542968 Neighboring gene NANOG hESC enhancer GRCh37_chr1:142552797-142553298 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142556836-142557418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:142660399-142660900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:142660901-142661400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:142663063-142663562 Neighboring gene uncharacterized LOC124900509 Neighboring gene sorting nexin 18 pseudogene 16 Neighboring gene ankyrin repeat domain 20 family member A12, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026981.2 

    Range
    101..1054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NT_113793.3 Reference GRCh38.p14 Primary Assembly

    Range
    124376..125329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    49411547..49412500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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