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SNX18P17 sorting nexin 18 pseudogene 17 [ Homo sapiens (human) ]

Gene ID: 100419024, updated on 28-Oct-2024

Summary

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Official Symbol
SNX18P17provided by HGNC
Official Full Name
sorting nexin 18 pseudogene 17provided by HGNC
Primary source
HGNC:HGNC:39625
See related
AllianceGenome:HGNC:39625
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SNX18P17 in Genome Data Viewer
Location:
1q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Unplaced Scaffold NT_187513.1 (69750..70699)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (1779911..1780860, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (142850772..142851721)

NT_187513.1Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:142801583-142802569 Neighboring gene ASNS pseudogene 5 Neighboring gene ankyrin repeat domain 20 family member A14, pseudogene Neighboring gene endogenous retrovirus group K member 18 Pol protein Neighboring gene uncharacterized LOC107987401 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:142876177-142876678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:142876679-142877178 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:142890293-142890794 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:142890795-142891294 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:142921538-142922039

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027137.2 

    Range
    101..1050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NT_187513.1 Reference GRCh38.p14 Primary Assembly

    Range
    69750..70699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    1779911..1780860 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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