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SNX18P20 sorting nexin 18 pseudogene 20 [ Homo sapiens (human) ]

Gene ID: 100419026, updated on 28-Oct-2024

Summary

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Official Symbol
SNX18P20provided by HGNC
Official Full Name
sorting nexin 18 pseudogene 20provided by HGNC
Primary source
HGNC:HGNC:39628
See related
AllianceGenome:HGNC:39628
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SNX18P20 in Genome Data Viewer
Location:
1q21.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 Unlocalized Scaffold NT_113796.3 (59288..60861)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (5735261..5736834, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (143402104..143403677)

NT_113796.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379271 Neighboring gene ankyrin repeat domain 20 family member A15, pseudogene Neighboring gene uncharacterized LOC105379272 Neighboring gene NANOG hESC enhancer GRCh37_chr1:143393020-143393521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:143422995-143423496 Neighboring gene sorting nexin 18 pseudogene 22 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:143456259-143456470 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:143460194-143460356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:143464413-143464914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:143464915-143465414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027139.1 

    Range
    101..1674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NT_113796.3 Reference GRCh38.p14 Primary Assembly

    Range
    59288..60861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    5735261..5736834 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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