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THUMPD3P1 THUMP domain containing 3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100419989, updated on 17-Sep-2024

Summary

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Official Symbol
THUMPD3P1provided by HGNC
Official Full Name
THUMP domain containing 3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:50793
See related
AllianceGenome:HGNC:50793
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See THUMPD3P1 in Genome Data Viewer
Location:
7p14.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (40152426..40154364)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (40309883..40311821)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (40192025..40193963)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18118 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:40186973-40188172 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:40188525-40189421 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 7 Neighboring gene M-phase specific PLK1 interacting protein Neighboring gene succinyl-CoA:glutarate-CoA transferase Neighboring gene uncharacterized LOC105375245 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25891 Neighboring gene MPRA-validated peak6500 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25892 Neighboring gene SUGCT antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026557.2 

    Range
    101..2039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    40152426..40154364
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    40309883..40311821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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