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LOC100420066 transmembrane protein 111 pseudogene [ Homo sapiens (human) ]

Gene ID: 100420066, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100420066
Gene description
transmembrane protein 111 pseudogene
See related
Ensembl:ENSG00000261527
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100420066 in Genome Data Viewer
Location:
16q22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (69443227..69444292, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (75245418..75246483, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (69477130..69478195, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak2627 silencer Neighboring gene transmembrane p24 trafficking protein 6 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:69405429-69405928 Neighboring gene telomeric repeat binding factor 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:69457805-69458352 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:69458353-69458900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7661 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:69477408-69477690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11039 Neighboring gene cytochrome b5 type B Neighboring gene ReSE screen-validated silencer GRCh37_chr16:69488879-69489096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11041 Neighboring gene uncharacterized LOC105371325 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:69556814-69558013 Neighboring gene Sharpr-MPRA regulatory region 4304 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:69563811-69565010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:69597937-69598833 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:69599594-69599770 Neighboring gene microRNA 1538

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • ER membrane protein complex subunit 3 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_026377.1 

    Range
    101..1166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    69443227..69444292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    75245418..75246483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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