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CROCCP4 CROCC pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 100421113, updated on 17-Sep-2024

Summary

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Official Symbol
CROCCP4provided by HGNC
Official Full Name
CROCC pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:43864
See related
Ensembl:ENSG00000227684 AllianceGenome:HGNC:43864
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CROCCP4 in Genome Data Viewer
Location:
1p36.13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16750235..16750964)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16471455..16472184)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (17076730..17077459)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903859 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:17064967-17065467 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17066365-17067286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17068238-17068738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17074986-17075486 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17076207-17077038 Neighboring gene RNA, U1 small nuclear 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17084732-17085540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17091934-17092434 Neighboring gene macrophage stimulating 1 like (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17098739-17099728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17101695-17102194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17102878-17103378 Neighboring gene PDE4DIP pseudogene 9 Neighboring gene microRNA 3675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • ciliary rootlet coiled-coil, rootletin pseudogene 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027067.2 

    Range
    101..830
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16750235..16750964
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    967520..968249
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    16471455..16472184
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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