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GAPDHP53 glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 [ Homo sapiens (human) ]

Gene ID: 100421318, updated on 17-Sep-2024

Summary

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Official Symbol
GAPDHP53provided by HGNC
Official Full Name
glyceraldehyde 3 phosphate dehydrogenase pseudogene 53provided by HGNC
Primary source
HGNC:HGNC:38559
See related
Ensembl:ENSG00000234069 AllianceGenome:HGNC:38559
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See GAPDHP53 in Genome Data Viewer
Location:
20p11.21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (24445412..24446314)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (24507391..24508293)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (24426048..24426950)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RNA, U1 small nuclear 23, pseudogene Neighboring gene uncharacterized LOC105372577 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24299151-24299652 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24423531-24424202 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24424203-24424874 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24424875-24425545 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24425863-24426594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24432920-24433420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24441797-24442704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24460095-24460596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24470679-24471340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24471341-24472000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24472001-24472660 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24484347-24484848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24484849-24485348 Neighboring gene synapse differentiation inducing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24492633-24493134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24493135-24493634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24565613-24566113 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24570889-24571480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24570298-24570888 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24590903-24591802 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24596611-24597428 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24614353-24615005 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:24615089-24616288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24619223-24619724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24619725-24620224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24715421-24716327 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24717937-24718763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:24723033-24723933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24727663-24728164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24728165-24728664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24743840-24744340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24770113-24770614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24789476-24789976 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24796263-24796764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24796765-24797264 Neighboring gene uncharacterized LOC107985402

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025000.1 

    Range
    101..1003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    24445412..24446314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    24507391..24508293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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