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MIR3197 microRNA 3197 [ Homo sapiens (human) ]

Gene ID: 100423023, updated on 10-Oct-2023

Summary

Official Symbol
MIR3197provided by HGNC
Official Full Name
microRNA 3197provided by HGNC
Primary source
HGNC:HGNC:38366
See related
Ensembl:ENSG00000263681 miRBase:MI0014245; AllianceGenome:HGNC:38366
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

See MIR3197 in Genome Data Viewer
Location:
21q22.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (41167557..41167629)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (39555889..39555961)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (42539484..42539556)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr21:42241274-42241775 Neighboring gene yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42296237-42296738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42296739-42297238 Neighboring gene NANOG hESC enhancer GRCh37_chr21:42306817-42307318 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42308234-42309433 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:42326589-42327160 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr21:42331949-42332650 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr21:42339602-42340102 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:42424381-42425580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42474333-42474833 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:42513074-42513270 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr21:42519321-42519905 Neighboring gene long intergenic non-protein coding RNA 323 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:42551642-42552451 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42572859-42573359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42572358-42572858 Neighboring gene beta-secretase 2 Neighboring gene placenta enriched 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42594561-42595060 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:42612073-42612217 Neighboring gene NANOG hESC enhancer GRCh37_chr21:42616252-42616757 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:42646500-42647699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42651763-42652318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42652319-42652873 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:42661864-42662364 Neighboring gene FAM3 metabolism regulating signaling molecule B

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036167.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL773572
    Related
    ENST00000582241.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    41167557..41167629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    39555889..39555961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)