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PHF20L1 PHD finger protein 20 like 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100433170, updated on 10-Oct-2024

Summary

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Gene symbol
PHF20L1
Gene description
PHD finger protein 20 like 1
Locus tag
CR201_G0050203
See related
Ensembl:ENSPPYG00000018891
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See PHF20L1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 7 NC_071992.2 (149174956..149248573)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 8 NC_071993.1 (152806062..152879849)

Chromosome 7 - NC_071992.2Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 11 Neighboring gene uncharacterized LOC129047552 Neighboring gene transmembrane protein 71 Neighboring gene uncharacterized LOC134761970 Neighboring gene thyroglobulin Neighboring gene uncharacterized LOC129047553 Neighboring gene Src like adaptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NSL complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PHD finger protein 20-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071992.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    149174956..149248573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054518851.2 → XP_054374826.2  PHD finger protein 20-like protein 1 isoform X5

  2. XM_024251058.3 → XP_024106826.2  PHD finger protein 20-like protein 1 isoform X7

  3. XM_054518852.2 → XP_054374827.2  PHD finger protein 20-like protein 1 isoform X8

  4. XM_024251061.3 → XP_024106829.1  PHD finger protein 20-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8RKV9, A0A2J8RKW5
    Conserved Domains (2) summary
    cd20454
    Location:86 → 144
    Tudor_PHF20L1; Tudor domain found in PHD finger protein 20-like protein 1 (PHF20L1) and similar proteins
    cl17705
    Location:3 → 68
    MBT; mbt repeat

  5. XM_024251059.3 → XP_024106827.2  PHD finger protein 20-like protein 1 isoform X8

  6. XM_024251049.3 → XP_024106817.2  PHD finger protein 20-like protein 1 isoform X1

  7. XM_024251056.3 → XP_024106824.2  PHD finger protein 20-like protein 1 isoform X7

  8. XM_024251060.3 → XP_024106828.2  PHD finger protein 20-like protein 1 isoform X9

  9. XM_054518853.2 → XP_054374828.2  PHD finger protein 20-like protein 1 isoform X9

  10. XM_024251050.3 → XP_024106818.2  PHD finger protein 20-like protein 1 isoform X1

  11. XM_054518847.2 → XP_054374822.2  PHD finger protein 20-like protein 1 isoform X2

  12. XM_054518848.2 → XP_054374823.2  PHD finger protein 20-like protein 1 isoform X3

  13. XM_054518849.2 → XP_054374824.2  PHD finger protein 20-like protein 1 isoform X4

  14. XM_063726816.1 → XP_063582886.1  PHD finger protein 20-like protein 1 isoform X3

  15. XM_024251053.3 → XP_024106821.2  PHD finger protein 20-like protein 1 isoform X4

  16. XM_024251054.3 → XP_024106822.2  PHD finger protein 20-like protein 1 isoform X5

  17. XM_024251055.3 → XP_024106823.2  PHD finger protein 20-like protein 1 isoform X6

  18. XM_063726817.1 → XP_063582887.1  PHD finger protein 20-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A2J8RKV9
Nucleotide Protein
Heading Accession and Version

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