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Tex50 testis expressed 50 [ Mus musculus (house mouse) ]

Gene ID: 100502590, updated on 28-Oct-2024

Summary

Official Symbol
Tex50provided by MGI
Official Full Name
testis expressed 50provided by MGI
Primary source
MGI:MGI:1922183
See related
Ensembl:ENSMUSG00000049160 AllianceGenome:MGI:1922183
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930469G21Rik
Summary
Orthologous to human TEX50 (testis expressed 50). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Restricted expression toward testis adult (RPKM 21.7) See more
Orthologs
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Genomic context

See Tex50 in Genome Data Viewer
Location:
1 H2.1; 1 69.75 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (160984413..160986883, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161156843..161159314, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163000837-163001115 Neighboring gene STARR-positive B cell enhancer ABC_E11097 Neighboring gene centromere protein L Neighboring gene kelch-like 20 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163061431-163061751 Neighboring gene STARR-seq mESC enhancer starr_02813 Neighboring gene STARR-seq mESC enhancer starr_02814 Neighboring gene STARR-seq mESC enhancer starr_02815 Neighboring gene ankyrin repeat domain 45 Neighboring gene STARR-seq mESC enhancer starr_02817 Neighboring gene predicted gene, 51252 Neighboring gene solute carrier family 9, member C2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Clone Names

  • AC138640.3

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
testis-expressed protein 50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195189.2NP_001182118.1  testis-expressed protein 50 precursor

    See identical proteins and their annotated locations for NP_001182118.1

    Status: VALIDATED

    Source sequence(s)
    AC138640
    Consensus CDS
    CCDS87903.1
    UniProtKB/TrEMBL
    Q9D5B7
    Related
    ENSMUSP00000154579.2, ENSMUST00000178511.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    160984413..160986883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)