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Gm15056 predicted gene 15056 [ Mus musculus (house mouse) ]

Gene ID: 100504014, updated on 17-Aug-2024

Summary

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Official Symbol
Gm15056provided by MGI
Official Full Name
predicted gene 15056provided by MGI
Primary source
MGI:MGI:3705859
See related
Ensembl:ENSMUSG00000082976 AllianceGenome:MGI:3705859
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Defb52
Expression
Restricted expression toward genital fat pad adult (RPKM 8.9) See more
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Genomic context

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See Gm15056 in Genome Data Viewer
Location:
8 A2; 8 10.35 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21390622..21392472, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20900606..20902456, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 48 pseudogene Neighboring gene proline rich 14-like pseudogene Neighboring gene defensin beta 33 Neighboring gene predicted gene 6040 Neighboring gene cDNA sequence AY761185 Neighboring gene STARR-seq mESC enhancer starr_20881 Neighboring gene STARR-seq mESC enhancer starr_20883 Neighboring gene STARR-seq mESC enhancer starr_20885 Neighboring gene defensin, alpha, 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. Patil AA, et al. Physiol Genomics, 2005 Sep 21. PMID 16033865
  2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC100504014
Names
beta-defensin 52
defensin beta 52

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177471.2 → NP_001170942.1  uncharacterized protein LOC100504014 precursor

    Status: VALIDATED

    Source sequence(s)
    AC140205
    Consensus CDS
    CCDS52500.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    21390622..21392472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242103.2 → XP_011240405.1  uncharacterized protein LOC100504014 isoform X1

    UniProtKB/TrEMBL
    E9Q8Z3
    Related
    ENSMUSP00000119300.3, ENSMUST00000122025.9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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