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Platr30 pluripotency associated transcript 30 [ Mus musculus (house mouse) ]

Gene ID: 100504145, updated on 28-Oct-2024

Summary

Official Symbol
Platr30provided by MGI
Official Full Name
pluripotency associated transcript 30provided by MGI
Primary source
MGI:MGI:4937214
See related
Ensembl:ENSMUSG00000097851 AllianceGenome:MGI:4937214
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm17580
Summary
Is active in nucleus. [provided by Alliance of Genome Resources, Oct 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

See Platr30 in Genome Data Viewer
Location:
3 F2.1; 3 41.77 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96252603..96265795)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96345287..96358479)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene nuclear encoded tRNA asparagine 1 (anticodon GTT) Neighboring gene STARR-seq mESC enhancer starr_08422 Neighboring gene nuclear encoded tRNA glutamine 5 (anticodon CTG) Neighboring gene nuclear encoded tRNA glutamic acid 3 (anticodon TTC) Neighboring gene predicted gene, 26553 Neighboring gene nuclear encoded tRNA glycine 5 (anticodon CCC) Neighboring gene U1b1 small nuclear RNA Neighboring gene U1b2 small nuclear RNA

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152105.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093350, AK135774
    Related
    ENSMUST00000199348.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    96252603..96265795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)