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PARD3-DT PARD3 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100505601, updated on 10-Oct-2023

Summary

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Official Symbol
PARD3-DTprovided by HGNC
Official Full Name
PARD3 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:44964
See related
Ensembl:ENSG00000226386 AllianceGenome:HGNC:44964
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PARD3-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See PARD3-DT in Genome Data Viewer
Location:
10p11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (34815768..34816422)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (34844311..34844965)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (35104696..35105350)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator Neighboring gene ribosomal protein L37 pseudogene 18 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2293 Neighboring gene ribosomal protein S12 pseudogene 16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35026216-35026716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35067774-35068274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35068275-35068775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35081917-35082619 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:35081214-35081916 Neighboring gene Sharpr-MPRA regulatory region 397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2294 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2295 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:35207011-35207678 Neighboring gene MPRA-validated peak927 silencer Neighboring gene SS18 like 2 pseudogene 1 Neighboring gene RNA, U6 small nuclear 847, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • PARD3 antisense RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108043.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BF511037, BX089194
    Related
    ENST00000446211.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    34815768..34816422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    34844311..34844965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases