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LINC01532 long intergenic non-protein coding RNA 1532 [ Homo sapiens (human) ]

Gene ID: 100505835, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01532provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1532provided by HGNC
Primary source
HGNC:HGNC:51272
See related
AllianceGenome:HGNC:51272
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01532 in Genome Data Viewer
Location:
19q12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (29002555..29013955)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (31532482..31544680)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (29493462..29504862)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724958 Neighboring gene long intergenic non-protein coding RNA 906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29474323-29474824 Neighboring gene RNA, 5S ribosomal pseudogene 470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29510025-29510526 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29538773-29539274 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:29552893-29553394 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:29553395-29553894 Neighboring gene uncharacterized LOC124904682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:29577209-29577710 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:29635999-29636174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14405 Neighboring gene ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CTD-2081K17.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040036.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011505, AK055100, BC039394

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    29002555..29013955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    31532482..31544680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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