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LOC100505918 uncharacterized LOC100505918 [ Homo sapiens (human) ]

Gene ID: 100505918, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100505918
Gene description
uncharacterized LOC100505918
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC100505918 in Genome Data Viewer
Location:
1q24.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (168400191..168422656, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (167752512..167776173, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (168369429..168391894, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene dynactin subunit 5 pseudogene Neighboring gene microRNA 557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168356076-168356657 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168356658-168357238 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:168357239-168357820 Neighboring gene uncharacterized LOC125312414 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:168397241-168397782 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1544 Neighboring gene QRSL1 pseudogene 1 Neighboring gene uncharacterized LOC101928565 Neighboring gene MPRA-validated peak443 silencer Neighboring gene MPRA-validated peak444 silencer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037851.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  2. NR_176058.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

  3. NR_176059.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022100, AL023755

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    168400191..168422656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    167752512..167776173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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