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MAP3K9-DT MAP3K9 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506411, updated on 10-Oct-2023

Summary

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Official Symbol
MAP3K9-DTprovided by HGNC
Official Full Name
MAP3K9 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53189
See related
Ensembl:ENSG00000259153 AllianceGenome:HGNC:53189
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
lincNMR
Expression
Broad expression in esophagus (RPKM 2.2), brain (RPKM 1.5) and 19 other tissues See more
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Genomic context

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See MAP3K9-DT in Genome Data Viewer
Location:
14q24.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (70808784..70816048)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (65014821..65022202)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5889 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:71120238-71120824 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8659 Neighboring gene tetratricopeptide repeat domain 9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:71133100-71133600 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:71133601-71134101 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:71164525-71165724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8660 Neighboring gene long intergenic non-protein coding RNA 1269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8661 Neighboring gene mitogen-activated protein kinase kinase kinase 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:71208701-71209202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5891 Neighboring gene Sharpr-MPRA regulatory region 11364/13366 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5892 Neighboring gene uncharacterized LOC124903341 Neighboring gene TMEM183A pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer. Gandhi M, et al. Nat Commun, 2020 Jun 25. PMID 32587247, Free PMC Article
  2. APOBEC3B expression is promoted by lincNMR collaborating with TGF-β-Smad pathway. Ota K, et al. Carcinogenesis, 2023 May 15. PMID 36335471

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. APOBEC3B expression is promoted by lincNMR collaborating with TGF-beta-Smad pathway.
    Title: APOBEC3B expression is promoted by lincNMR collaborating with TGF-β-Smad pathway.
  2. The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer.
    Title: The lncRNA lincNMR regulates nucleotide metabolism via a YBX1 - RRM2 axis in cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • long intergenic noncoding RNA-nucleotide metabolism regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184163.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

  2. NR_184164.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

  3. NR_184165.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816
    Related
    ENST00000557691.3

  4. NR_184166.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

  5. NR_184167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

  6. NR_184168.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

  7. NR_184169.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004816

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    70808784..70816048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    65014821..65022202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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