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DSCAM-AS1 DSCAM antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506492, updated on 8-Nov-2023

Summary

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Official Symbol
DSCAM-AS1provided by HGNC
Official Full Name
DSCAM antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40197
See related
Ensembl:ENSG00000235123 AllianceGenome:HGNC:40197
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
M41
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
21q22.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (40383083..40385358)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (38771917..38774192)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (41755010..41757285)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr21:41241262-41241415 Neighboring gene meiotic recombination hotspot PCP4-1 Neighboring gene meiotic recombination hotspot PCP4-2 Neighboring gene Purkinje cell protein 4 Neighboring gene MPRA-validated peak4411 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:41400415-41400914 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:41436401-41436568 Neighboring gene NANOG hESC enhancer GRCh37_chr21:41474546-41475047 Neighboring gene DS cell adhesion molecule Neighboring gene microRNA 4760 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:41709903-41711102 Neighboring gene uncharacterized LOC105369294 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:41792223-41793422 Neighboring gene small nucleolar RNA SNORA51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA DSCAM-AS1: A Pivotal Therapeutic Target in Cancer. Hu C. Mini Rev Med Chem, 2023. PMID 35996247
  2. LncRNA DSCAM-AS1 Negatively Interacts with miR-124 to Promote Hepatocellular Carcinoma Proliferation. Wang Z, et al. Crit Rev Eukaryot Gene Expr, 2022. PMID 35695605
  3. Long non-coding RNA (lncRNA) DSCAM-AS1 is upregulated in breast cancer. Tarighi M, et al. Breast Dis, 2021. PMID 33554879
  4. The clinical significance of circulating DSCAM-AS1 in patients with ER-positive breast cancer and construction of its competitive endogenous RNA network. Moradi MT, et al. Mol Biol Rep, 2020 Oct. PMID 33040318
  5. DSCAM-AS1 accelerates cell proliferation and migration in osteosarcoma through miR-186-5p/GPRC5A signaling. Ning Y, et al. Cancer Biomark, 2021. PMID 32865178

See all (25) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA DSCAM-AS1: A Pivotal Therapeutic Target in Cancer.
    Title: LncRNA DSCAM-AS1: A Pivotal Therapeutic Target in Cancer.
  2. DSCAM-AS1 promotes cervical carcinoma cell proliferation and invasion via sponging miR-338-3p.
    Title: DSCAM-AS1 promotes cervical carcinoma cell proliferation and invasion via sponging miR-338-3p.
  3. LncRNA DSCAM-AS1 Negatively Interacts with miR-124 to Promote Hepatocellular Carcinoma Proliferation.
    Title: LncRNA DSCAM-AS1 Negatively Interacts with miR-124 to Promote Hepatocellular Carcinoma Proliferation.
  4. Long non-coding RNA DSCAM-AS1 promotes pancreatic cancer progression via regulating the miR-136-5p/PBX3 axis.
    Title: Long non-coding RNA DSCAM-AS1 promotes pancreatic cancer progression via regulating the miR-136-5p/PBX3 axis.
  5. Upregulation of the long noncoding RNAs DSCAM-AS1 and MANCR is a potential diagnostic marker for breast carcinoma.
    Title: Upregulation of the long noncoding RNAs DSCAM-AS1 and MANCR is a potential diagnostic marker for breast carcinoma.
  6. Long non-coding RNA (lncRNA) DSCAM-AS1 is upregulated in breast cancer.
    Title: Long non-coding RNA (lncRNA) DSCAM-AS1 is upregulated in breast cancer.
  7. DSCAM-AS1 accelerates cell proliferation and migration in osteosarcoma through miR-186-5p/GPRC5A signaling.
    Title: DSCAM-AS1 accelerates cell proliferation and migration in osteosarcoma through miR-186-5p/GPRC5A signaling.
  8. LncRNA DSCAM-AS1 interacts with YBX1 to promote cancer progression by forming a positive feedback loop that activates FOXA1 transcription network.
    Title: LncRNA DSCAM-AS1 interacts with YBX1 to promote cancer progression by forming a positive feedback loop that activates FOXA1 transcription network.
  9. The clinical significance of circulating DSCAM-AS1 in patients with ER-positive breast cancer and construction of its competitive endogenous RNA network.
    Title: The clinical significance of circulating DSCAM-AS1 in patients with ER-positive breast cancer and construction of its competitive endogenous RNA network.
  10. Long non-coding RNA DSCAM-AS1 upregulates USP47 expression through sponging miR-101-3p to accelerate osteosarcoma progression.
    Title: Long non-coding RNA DSCAM-AS1 upregulates USP47 expression through sponging miR-101-3p to accelerate osteosarcoma progression.
Submit: New GeneRIF Correction See all GeneRIFs (21)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • DSCAM antisense RNA 1 (non-protein coding)

Clone Names

  • AF042090.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038896.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AF401029, AF401033
    Related
    ENST00000427451.5

  2. NR_038898.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has a distinct and shorter internal segment, compared to variant 1.
    Source sequence(s)
    AF401029
    Related
    ENST00000455354.1

  3. NR_038899.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has a distinct and shorter internal segment, compared to variant 1.
    Source sequence(s)
    AF401029, AF401035
    Related
    ENST00000422749.5

  4. NR_038900.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AF401030
    Related
    ENST00000444046.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    40383083..40385358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791814.1 Reference GRCh38.p14 PATCHES

    Range
    522737..525012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    38771917..38774192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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