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LINC02349 long intergenic non-protein coding RNA 2349 [ Homo sapiens (human) ]

Gene ID: 100506530, updated on 17-Sep-2024

Summary

Official Symbol
LINC02349provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2349provided by HGNC
Primary source
HGNC:HGNC:53271
See related
Ensembl:ENSG00000259284 AllianceGenome:HGNC:53271
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02349 in Genome Data Viewer
Location:
15q22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (61729918..61731389)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (59533471..59534942)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (62022117..62023588)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984782 Neighboring gene uncharacterized LOC101928850 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:61932853-61933481 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:61973031-61973632 Neighboring gene uncharacterized LOC107984783 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62119811-62120312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62120313-62120812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62122812-62123677 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62123678-62124542 Neighboring gene uncharacterized LOC124903501 Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9520 Neighboring gene VPS13C divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146448.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BQ010820, BX110077
    Related
    ENST00000561386.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    61729918..61731389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    59533471..59534942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)